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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
ChIP-seq
91
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
141
DNA binding
91
Transcription
15
DNA methylation
11
DNA accessibility
Target of assay
histone modification
228
histone
128
broad histone mark
99
narrow histone mark
79
control
62
transcription factor
19
RNA binding protein
3
chromatin remodeller
Date released
715
February, 2021
318
November, 2017
314
May, 2020
299
August, 2021
259
May, 2021
212
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
118
October, 2019
108
July, 2019
88
November, 2018
63
December, 2017
61
March, 2020
59
September, 2020
51
November, 2019
49
April, 2018
47
September, 2023
46
October, 2018
41
September, 2018
35
December, 2018
28
May, 2019
25
February, 2020
23
February, 2018
23
January, 2019
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
May, 2024
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
228
fastq
225
bam
166
bigWig
91
tsv
49
bed narrowPeak
27
bigBed narrowPeak
21
bed bed3+
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
257
Homo sapiens
Biosample type
204
tissue
31
in vitro differentiated cells
23
primary cell
Organ
145
pancreas
79
connective tissue
48
adipose tissue
21
liver
17
epithelium
7
musculature of body
Project
258
AMP
Genome assembly (visualization)
170
hg19
163
GRCh38
Lab
258
AMP-T2D consortium
Audit category:
23
missing controlled_by
Audit category:
6
inconsistent control read length
month_released!
October, 2017
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
258 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
14
89
1
1
liver
15
3
1
body of pancreas
17
subcutaneous adipose tissue
12
1
white adipose tissue
12
+ See 7 more…
in vitro differentiated cells
adipocyte
30
1
primary cell
pancreatic alpha cell
6
1
pancreatic beta cell
6
1
skeletal muscle myoblast
3
1
2
pancreatic acinar cell
2
1
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