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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
37
ChIP-seq
31
ATAC-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
1
RNA microarray
Assay category
37
DNA binding
32
DNA accessibility
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
4
transcription factor
3
RNA binding protein
3
nucleotide modification
1
chromatin remodeller
Date released
20
May, 2021
19
December, 2017
15
November, 2019
13
February, 2023
6
November, 2020
3
March, 2020
2
August, 2021
1
December, 2019
1
October, 2019
Available data
45
bed narrowPeak
39
bam
34
bigWig
19
fastq
15
bigBed narrowPeak
3
tagAlign
2
tsv
1
bedpe bed3+
1
hic
Organism
79
Homo sapiens
Biosample type
primary cell
45
cell line
22
in vitro differentiated cells
13
tissue
Organ
593
liver
312
heart
273
pancreas
264
kidney
232
brain
180
connective tissue
140
blood vessel
140
vasculature
115
limb
96
bone element
91
adipose tissue
85
artery
80
epithelium
77
musculature of body
61
blood
61
bodily fluid
38
nerve
37
eye
24
spleen
23
embryo
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
78
AMP
2
T1D
Genome assembly (visualization)
48
hg19
33
GRCh38
Lab
74
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
47
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent control read length
month_released!
October, 2017
assay_title!
total RNA-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
RNA microarray
cell line
EndoC_BH1
15
19
6
2
1
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
pancreatic PP cell
3
tissue
pigmented layer of retina
12
renal glomerulus
1
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