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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ChIP-seq
97
total RNA-seq
83
ATAC-seq
69
single cell RNA-seq
47
WGBS
18
DNase-seq
7
Hi-C
5
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
104
DNA binding
Target of assay
77
histone
77
histone modification
39
narrow histone mark
38
broad histone mark
21
control
6
transcription factor
5
RNA binding protein
1
chromatin remodeller
Date released
26
August, 2017
24
October, 2019
21
September, 2018
15
December, 2017
6
November, 2017
4
August, 2021
3
June, 2019
3
May, 2021
2
May, 2019
Available data
104
bam
82
bigWig
78
bed narrowPeak
68
fastq
32
bigBed narrowPeak
7
tagAlign
6
bed broadPeak
6
bigBed broadPeak
3
bed bed3+
Organism
104
Homo sapiens
Biosample type
86
primary cell
18
in vitro differentiated cells
Organ
552
liver
203
pancreas
201
brain
142
connective tissue
130
heart
104
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
36
kidney
35
nerve
34
artery
31
musculature of body
20
spleen
18
embryo
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
104
AMP
Genome assembly (visualization)
82
hg19
78
GRCh38
Lab
104
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
October, 2017
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
104 results
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Clear Filters
ChIP-seq
primary cell
endothelial cell of umbilical vein
17
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
+ See 6 more…
in vitro differentiated cells
hepatocyte
15
pancreatic PP cell
3
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