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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
68
ChIP-seq
65
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
146
Transcription
68
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
49
histone
49
histone modification
26
narrow histone mark
23
broad histone mark
15
control
4
RNA binding protein
4
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
32
July, 2018
29
April, 2018
29
August, 2017
19
September, 2020
15
December, 2017
7
August, 2020
6
February, 2021
6
November, 2017
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
254
bam
252
fastq
244
bigWig
129
bed narrowPeak
120
tsv
80
zippedFastqFolder
71
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
20
bed bed3+
7
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
252
Homo sapiens
Biosample type
237
primary cell
15
in vitro differentiated cells
Organ
465
liver
461
pancreas
252
epithelium
100
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
23
embryo
23
spleen
11
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
183
AMP
69
HPAP
Genome assembly (visualization)
178
GRCh38
170
hg19
Lab
183
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
October, 2017
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
252 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
8
5
pancreatic delta cell
11
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in vitro differentiated cells
hepatocyte
15
See all biosamples
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