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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
69
ChIP-seq
66
single cell RNA-seq
32
ATAC-seq
6
WGBS
Assay category
147
Transcription
69
DNA binding
32
DNA accessibility
6
DNA methylation
Target of assay
50
histone
50
histone modification
27
narrow histone mark
23
broad histone mark
16
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
61
September, 2018
37
February, 2023
33
July, 2018
29
April, 2018
29
August, 2017
19
December, 2017
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
3
November, 2017
2
October, 2018
1
June, 2018
Available data
291
bam
278
bigWig
254
fastq
155
tsv
134
bed narrowPeak
80
zippedFastqFolder
59
bigBed narrowPeak
15
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bedpe bed3+
4
hic
3
cool
Organism
254
Homo sapiens
Biosample type
235
primary cell
19
in vitro differentiated cells
Organ
466
pancreas
465
liver
257
epithelium
100
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
27
embryo
23
spleen
11
brain
6
vasculature
blood vessel
2
musculature of body
Project
185
AMP
69
HPAP
Genome assembly (visualization)
179
GRCh38
170
hg19
Lab
185
AMP-T2D consortium
69
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
October, 2017
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
primary cell
pancreatic alpha cell
52
13
12
13
6
pancreatic beta cell
21
13
12
10
pancreatic ductal cell
4
13
9
4
pancreatic acinar cell
4
8
9
5
pancreatic delta cell
11
+ See 4 more…
in vitro differentiated cells
hepatocyte
15
Hepatic endoderm
4
See all biosamples
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