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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
12
ATAC-seq
4
total RNA-seq
2
WGBS
1
DNase-seq
1
pCHi-C
Assay category
20
DNA binding
13
DNA accessibility
4
Transcription
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
8
February, 2021
8
February, 2023
7
December, 2018
7
January, 2019
1
March, 2020
October, 2017
Available data
31
bam
23
fastq
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
40
Homo sapiens
Biosample type
40
tissue
Organ
941
pancreas
791
liver
683
connective tissue
524
epithelium
490
adipose tissue
354
kidney
353
heart
270
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
40
AMP
Genome assembly (visualization)
25
hg19
23
GRCh38
Lab
40
AMP-T2D consortium
month_released!
October, 2017
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
total RNA-seq
WGBS
DNase-seq
pCHi-C
tissue
spleen
20
2
1
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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