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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
73
total RNA-seq
51
WGBS
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
94
DNA accessibility
73
Transcription
51
DNA methylation
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
86
May, 2022
56
February, 2023
19
September, 2020
17
May, 2021
10
November, 2020
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
3
March, 2020
3
October, 2019
2
June, 2019
2
March, 2019
1
August, 2022
1
February, 2020
Available data
80
fastq
80
zippedFastqFolder
16
bigWig
13
bam
9
tsv
6
txt
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
232
Homo sapiens
Biosample type
149
primary cell
59
tissue
25
cell line
Organ
233
pancreas
212
kidney
185
epithelium
145
heart
89
bone element
48
blood vessel
48
vasculature
43
liver
39
artery
27
brain
24
eye
20
lung
18
connective tissue
11
adipose tissue
11
musculature of body
8
blood
8
bodily fluid
8
limb
4
skeleton
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
56
AMP
28
T1D
Genome assembly (visualization)
hg19
476
GRCh38
Lab
149
Klaus Kaestner, Upenn
37
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
24
inconsistent ontology term
1
audit script error
month_released!
October, 2018
assay_title!
ChIP-seq
assembly!
hg19
BIOSAMPLE
ASSAY
233 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
7
4
1
pancreas
1
2
4
1
body of pancreas
1
2
2
cell line
EndoC_BH1
16
6
2
1
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