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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
283
total RNA-seq
102
ChIP-seq
62
ATAC-seq
single cell RNA-seq
11
snATAC-seq
8
DNase-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
285
Transcription
102
DNA binding
83
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
73
histone
73
histone modification
37
broad histone mark
36
narrow histone mark
24
control
7
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
159
August, 2017
120
July, 2018
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
18
October, 2019
11
September, 2018
9
March, 2020
8
January, 2021
7
November, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
409
bam
358
bigWig
269
tsv
195
fastq
101
bed narrowPeak
29
bed bed3+
29
bigBed narrowPeak
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
479
Homo sapiens
Biosample type
448
tissue
23
primary cell
15
cell line
Organ
813
pancreas
790
liver
657
connective tissue
468
adipose tissue
epithelium
300
heart
290
kidney
283
brain
230
vasculature
224
blood vessel
159
bone element
139
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
456
AMP
30
T1D
Genome assembly (visualization)
398
hg19
371
GRCh38
Lab
423
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
audit script error
Audit category:
33
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2018
assay_title!
single cell RNA-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
486 results
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total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
278
50
58
7
1
3
4
1
1
pancreas
2
14
4
2
1
2
1
1
1
body of pancreas
3
2
4
4
2
2
primary cell
pancreatic endocrine cell
23
cell line
Panc1
13
1
1
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