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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
401
total RNA-seq
167
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
167
DNA binding
Target of assay
121
histone
121
histone modification
62
narrow histone mark
59
broad histone mark
37
control
9
transcription factor
3
RNA binding protein
Date released
94
August, 2017
October, 2018
32
September, 2018
13
November, 2019
13
October, 2019
6
September, 2017
4
May, 2021
3
March, 2020
2
May, 2019
Available data
147
bam
121
bigWig
112
fastq
100
bed narrowPeak
21
bed bed3+
19
bigBed narrowPeak
19
tagAlign
12
bed broadPeak
Organism
160
Homo sapiens
Biosample type
70
primary cell
66
tissue
28
cell line
3
in vitro differentiated cells
Organ
552
liver
218
brain
167
pancreas
134
heart
130
connective tissue
129
epithelium
102
vasculature
99
blood vessel
66
limb
60
blood
60
bodily fluid
52
kidney
50
adipose tissue
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
163
AMP
4
T1D
Genome assembly (visualization)
123
hg19
117
GRCh38
Lab
167
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
month_released!
October, 2018
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
167 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
islet of Langerhans
50
pancreas
14
body of pancreas
2
cell line
EndoC_BH1
15
Panc1
13
in vitro differentiated cells
pancreatic PP cell
3
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