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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
49
ChIP-seq
6
WGBS
4
ATAC-seq
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
49
DNA binding
6
DNA methylation
4
DNA accessibility
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
transcription factor
11
narrow histone mark
6
control
Date released
386
February, 2021
55
August, 2017
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
Available data
420
bigWig
419
bam
401
tsv
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
462
Homo sapiens
Biosample type
460
tissue
2
primary cell
1
in vitro differentiated cells
Organ
831
pancreas
638
connective tissue
463
adipose tissue
446
epithelium
433
liver
299
heart
244
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
48
musculature of body
38
limb
37
embryo
17
nerve
16
skeleton
12
spleen
10
lung
9
vein
7
blood
7
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
463
AMP
Genome assembly (visualization)
416
hg19
415
GRCh38
Lab
463
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
October, 2018
assay_title!
snATAC-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
463 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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