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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
3
pCHi-C
Assay category
15
3D chromatin structure
Date released
10
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
August, 2018
Available data
3136
bam
2972
bigWig
1643
bed narrowPeak
1521
tsv
1268
fastq
918
bigBed narrowPeak
392
tagAlign
309
bed broadPeak
272
bigBed broadPeak
261
bed bed3+
155
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
18
bedpe bed3+
17
hic
12
bed bed3
7
bed bedgraph
3
csv
3
hdf5
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
9
tissue
7
in vitro differentiated cells
2
cell line
Organ
4
pancreas
3
heart
blood vessel
2
epithelium
2
liver
2
musculature of body
2
vasculature
1
adipose tissue
1
connective tissue
1
vein
Project
18
AMP
Genome assembly (visualization)
16
hg19
Lab
16
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
audit script error
month_released!
October, 2018
audit.ERROR.category!
audit script error
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
18 results
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Clear Filters
Hi-C
pCHi-C
tissue
islet of Langerhans
2
psoas muscle
2
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 2 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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