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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
ChIP-seq
207
DNase-seq
27
ATAC-seq
5
FAIRE-seq
Assay category
403
DNA binding
239
DNA accessibility
Target of assay
341
histone
341
histone modification
213
broad histone mark
128
narrow histone mark
62
transcription factor
21
RNA binding protein
4
chromatin remodeller
3
other context
3
other post-translational modification
Date released
210
June, 2019
97
May, 2019
64
April, 2019
63
November, 2017
62
October, 2019
50
December, 2017
October, 2018
42
August, 2017
17
November, 2018
14
September, 2018
6
January, 2019
6
October, 2017
5
September, 2017
3
December, 2018
2
July, 2019
1
November, 2020
Available data
2734
bam
2600
bigWig
1479
tsv
1368
bed narrowPeak
871
fastq
642
bigBed narrowPeak
378
tagAlign
270
bed bed3+
263
bed broadPeak
226
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
35
bed bedMethyl
35
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
8
csv
7
bed bedgraph
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
636
Homo sapiens
Biosample type
516
tissue
cell line
109
primary cell
17
in vitro differentiated cells
Organ
127
brain
103
kidney
94
heart
84
limb
83
vasculature
79
blood vessel
75
epithelium
65
liver
47
musculature of body
44
pancreas
26
nerve
25
artery
23
connective tissue
18
ureter
13
spleen
13
vein
6
eye
5
adipose tissue
Project
642
AMP
Genome assembly (visualization)
630
GRCh38
567
hg19
Lab
642
AMP-T2D consortium
Audit category:
27
inconsistent control
24
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
October, 2018
biosample_type!
cell line
BIOSAMPLE
ASSAY
642 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
tibial nerve
24
2
heart
7
18
+ See 52 more…
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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