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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
45
DNase-seq
4
ATAC-seq
Assay category
58
DNA binding
49
DNA accessibility
Target of assay
57
histone
57
histone modification
38
broad histone mark
19
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
49
October, 2019
47
June, 2019
6
May, 2019
October, 2018
3
August, 2017
1
November, 2018
1
November, 2020
Available data
684
bam
656
bigWig
485
tsv
162
bed narrowPeak
107
bigBed narrowPeak
78
fastq
63
bed bed3+
46
bed broadPeak
45
bigBed broadPeak
22
tagAlign
6
bed bed3
4
bed bedMethyl
4
bed bedgraph
4
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
107
Homo sapiens
Biosample type
89
tissue
15
primary cell
3
in vitro differentiated cells
Organ
358
liver
127
brain
104
kidney
94
heart
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
51
pancreas
47
musculature of body
26
nerve
25
artery
23
connective tissue
18
ureter
13
spleen
13
vein
6
eye
5
adipose tissue
Project
107
AMP
Genome assembly (visualization)
106
hg19
103
GRCh38
Lab
107
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
month_released!
October, 2018
BIOSAMPLE
ASSAY
107 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
tibial nerve
24
2
tibial artery
18
2
muscle of leg
6
13
muscle of arm
17
adipose tissue
1
1
+ See 4 more…
primary cell
cardiac fibroblast
3
3
mesenchymal stem cell
6
brain pericyte
1
hepatic stellate cell
1
osteoblast
1
in vitro differentiated cells
adipocyte
1
2
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