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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
14
ChIP-seq
4
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
WGBS
Assay category
398
Transcription
14
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
12
transcription factor
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
12
July, 2019
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
420
bigWig
419
bam
401
tsv
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
420
Homo sapiens
Biosample type
418
tissue
2
primary cell
Organ
622
liver
581
pancreas
565
connective tissue
420
adipose tissue
299
epithelium
224
heart
222
brain
155
vasculature
150
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
420
AMP
Genome assembly (visualization)
418
hg19
417
GRCh38
Lab
420
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
October, 2018
BIOSAMPLE
ASSAY
420 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
WGBS
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
1
1
2
subcutaneous adipose tissue
6
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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