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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
44
ChIP-seq
10
ATAC-seq
Assay category
98
Transcription
44
DNA binding
10
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
95
May, 2021
45
May, 2020
7
August, 2020
3
September, 2020
2
March, 2020
Available data
169
fastq
153
zippedFastqFolder
152
bigWig
142
bam
104
tsv
44
bed narrowPeak
44
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
152
Homo sapiens
Biosample type
150
primary cell
2
cell line
Organ
12
epithelium
12
pancreas
Project
AMP
142
T1D
10
HPAP
Genome assembly (visualization)
152
GRCh38
142
hg19
Lab
140
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
October, 2018
target.investigated_as!
narrow histone mark
award.project!
AMP
BIOSAMPLE
ASSAY
152 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
44
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
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cell line
EndoC_BH1
2
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