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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
3
pCHi-C
Assay category
5
3D chromatin structure
Date released
4
March, 2020
2
October, 2019
1
August, 2018
1
August, 2021
Available data
1168
bam
1096
bigWig
724
fastq
694
bed narrowPeak
405
bigBed narrowPeak
371
tsv
153
tagAlign
87
bed broadPeak
87
bigBed broadPeak
73
zippedFastqFolder
47
bed bed3+
8
bedpe bed3+
7
bed bed3
7
bed bedgraph
6
hic
5
bed bedMethyl
5
bigBed bedMethyl
4
txt
3
hdf5
3
tar
2
csv
2
ibed
1
vcf
Organism
8
Homo sapiens
Biosample type
tissue
7
in vitro differentiated cells
1
cell line
Organ
epithelium
4
pancreas
1
adipose tissue
1
blood vessel
1
connective tissue
1
liver
1
vasculature
1
vein
Project
8
AMP
Genome assembly (visualization)
7
hg19
Lab
7
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
month_released!
October, 2018
organ_slims!
epithelium
biosample_type!
tissue
BIOSAMPLE
ASSAY
8 results
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Hi-C
pCHi-C
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
white fat cell
1
cell line
HepG2
1
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