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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ATAC-seq
35
ChIP-seq
20
total RNA-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
2
FAIRE-seq
2
RRBS
1
pCHi-C
Assay category
49
DNA accessibility
35
DNA binding
20
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
22
control
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
24
August, 2017
24
May, 2022
18
February, 2023
October, 2018
10
October, 2019
8
January, 2021
6
March, 2020
4
July, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
1
November, 2018
1
November, 2019
Available data
42
bam
34
fastq
26
bed narrowPeak
10
bigWig
10
tagAlign
7
bed broadPeak
6
txt
4
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
114
Homo sapiens
Biosample type
108
tissue
7
cell line
Organ
300
pancreas
260
liver
epithelium
149
kidney
127
heart
100
connective tissue
93
bone element
69
brain
55
eye
49
adipose tissue
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
87
AMP
28
T1D
Genome assembly (visualization)
412
hg19
GRCh38
Lab
55
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
audit script error
month_released!
October, 2018
organ_slims!
epithelium
assembly!
GRCh38
BIOSAMPLE
ASSAY
115 results
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ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
FAIRE-seq
RRBS
pCHi-C
tissue
islet of Langerhans
36
25
18
7
3
4
1
1
pancreas
2
1
4
1
1
1
1
body of pancreas
1
1
cell line
Panc1
7
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