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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
total RNA-seq
69
ChIP-seq
62
ATAC-seq
11
snATAC-seq
8
DNase-seq
8
single cell RNA-seq
5
Hi-C
4
MeRIP-seq
4
WGBS
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
pCHi-C
Assay category
299
Transcription
83
DNA accessibility
69
DNA binding
6
DNA methylation
5
3D chromatin structure
Target of assay
46
histone
46
histone modification
25
broad histone mark
24
control
21
narrow histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
137
August, 2017
126
July, 2018
October, 2018
39
November, 2019
37
May, 2021
24
May, 2022
18
February, 2023
18
October, 2019
9
March, 2020
8
April, 2018
8
January, 2021
7
November, 2018
6
July, 2019
6
September, 2017
5
March, 2019
5
October, 2017
4
June, 2019
4
November, 2020
2
August, 2021
2
May, 2019
1
August, 2022
1
February, 2020
Available data
390
bam
339
bigWig
283
tsv
175
fastq
89
bed narrowPeak
29
bigBed narrowPeak
21
bed broadPeak
19
bed bed3+
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
460
Homo sapiens
Biosample type
444
tissue
15
cell line
8
primary cell
Organ
839
pancreas
778
liver
644
connective tissue
epithelium
456
adipose tissue
393
heart
354
kidney
282
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
437
AMP
30
T1D
Genome assembly (visualization)
379
hg19
352
GRCh38
Lab
404
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent assembly
month_released!
October, 2018
organ_slims!
epithelium
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
467 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
MeRIP-seq
WGBS
FAIRE-seq
RRBS
small RNA-seq
pCHi-C
tissue
islet of Langerhans
284
40
58
7
1
3
4
1
1
pancreas
2
14
4
2
1
2
1
1
1
body of pancreas
3
2
4
4
2
2
cell line
Panc1
13
1
1
primary cell
pancreatic stellate cell
4
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
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