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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
WGBS
3
total RNA-seq
2
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
36
DNA binding
4
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
30
histone
30
histone modification
20
broad histone mark
10
narrow histone mark
6
control
Date released
40
August, 2017
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
March, 2020
1
May, 2023
1
November, 2019
Available data
bigWig
419
bam
401
tsv
21
fastq
8
bed narrowPeak
8
tagAlign
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
47
Homo sapiens
Biosample type
47
tissue
1
in vitro differentiated cells
Organ
312
pancreas
223
epithelium
223
kidney
169
heart
169
liver
101
bone element
96
connective tissue
81
vasculature
80
blood vessel
64
brain
56
artery
55
eye
48
adipose tissue
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
48
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2018
files.file_type!
bigWig
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
WGBS
total RNA-seq
ATAC-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
adipose tissue
1
1
1
1
1
subcutaneous adipose tissue
1
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
in vitro differentiated cells
white fat cell
1
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