Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
73
total RNA-seq
51
WGBS
44
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
94
DNA accessibility
73
Transcription
51
DNA methylation
44
DNA binding
1
3D chromatin structure
Target of assay
40
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
86
May, 2022
56
February, 2023
29
August, 2017
19
September, 2020
18
May, 2021
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
6
February, 2021
4
August, 2021
4
July, 2018
4
November, 2018
4
September, 2017
3
March, 2020
2
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
99
fastq
80
zippedFastqFolder
43
bam
16
bigWig
9
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
275
Homo sapiens
Biosample type
161
primary cell
81
tissue
34
cell line
1
in vitro differentiated cells
Organ
277
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
89
bone element
77
connective tissue
71
blood vessel
71
vasculature
48
artery
47
adipose tissue
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
149
HPAP
100
AMP
28
T1D
Genome assembly (visualization)
hg19
593
GRCh38
Lab
149
Klaus Kaestner, Upenn
81
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
month_released!
October, 2018
assembly!
hg19
BIOSAMPLE
ASSAY
277 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
primary cell
pancreatic alpha cell
29
42
31
6
pancreatic beta cell
16
11
16
6
pancreatic acinar cell
4
tissue
islet of Langerhans
16
18
19
7
4
1
pancreas
1
2
2
4
1
body of pancreas
1
2
1
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
Download