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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ATAC-seq
71
total RNA-seq
45
WGBS
44
ChIP-seq
11
snATAC-seq
10
MeRIP-seq
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
94
DNA accessibility
71
Transcription
45
DNA methylation
44
DNA binding
1
3D chromatin structure
Target of assay
40
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
86
May, 2022
56
February, 2023
29
August, 2017
19
September, 2020
18
May, 2021
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
7
August, 2020
4
July, 2018
4
November, 2018
4
September, 2017
3
August, 2021
2
June, 2019
2
March, 2019
2
March, 2020
2
November, 2019
1
August, 2022
1
May, 2019
Available data
99
fastq
80
zippedFastqFolder
43
bam
16
bigWig
tsv
6
txt
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bed broadPeak
2
bed bed3+
2
bed narrowPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
266
Homo sapiens
Biosample type
155
primary cell
78
tissue
34
cell line
1
in vitro differentiated cells
Organ
268
pancreas
213
kidney
204
epithelium
154
liver
108
brain
107
heart
89
bone element
73
connective tissue
61
blood vessel
61
vasculature
44
adipose tissue
44
artery
23
limb
22
eye
20
musculature of body
19
lung
14
blood
14
bodily fluid
11
nerve
10
spleen
8
embryo
5
vein
4
gonad
4
ovary
4
skeleton
1
bone marrow
1
lymph node
1
pituitary gland
1
skin of body
1
thymus
Project
143
HPAP
97
AMP
28
T1D
Genome assembly (visualization)
hg19
189
GRCh38
Lab
143
Klaus Kaestner, Upenn
79
AMP-T2D consortium
33
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
month_released!
October, 2018
assembly!
hg19
files.file_type!
tsv
BIOSAMPLE
ASSAY
268 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
snATAC-seq
MeRIP-seq
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
Hi-C
primary cell
pancreatic alpha cell
29
42
25
6
pancreatic beta cell
16
11
16
6
pancreatic acinar cell
4
tissue
islet of Langerhans
16
17
19
7
4
1
pancreas
1
2
2
4
body of pancreas
2
1
2
cell line
EndoC_BH1
16
2
6
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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