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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
DNase-seq
12
ChIP-seq
2
ATAC-seq
Assay category
87
DNA accessibility
12
DNA binding
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
Date released
82
June, 2019
12
August, 2017
2
November, 2018
1
March, 2019
1
October, 2017
1
October, 2019
Available data
780
bam
712
bigWig
439
tsv
434
fastq
357
bed narrowPeak
155
bigBed narrowPeak
107
bed bed3+
99
bed broadPeak
85
bigBed broadPeak
80
zippedFastqFolder
68
txt
64
xls
19
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
hic
7
bedpe bed3+
5
csv
3
cool
1
bedpe
1
hdf5
Organism
93
Homo sapiens
Biosample type
88
tissue
10
primary cell
1
cell line
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
99
AMP
Genome assembly (visualization)
92
GRCh38
89
hg19
Lab
97
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
October, 2018
BIOSAMPLE
ASSAY
99 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 7 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
kidney capillary endothelial cell
1
+ See 3 more…
cell line
Panc1
1
See all biosamples
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