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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
Assay category
24
DNA binding
Target of assay
770
histone
770
histone modification
395
narrow histone mark
375
broad histone mark
172
control
59
transcription factor
24
RNA binding protein
7
recombinant protein
5
nucleotide modification
Date released
5
May, 2019
5
May, 2021
5
May, 2024
4
April, 2019
3
June, 2019
1
August, 2021
1
November, 2019
Available data
94
bigWig
93
bed narrowPeak
91
bam
81
bigBed narrowPeak
fastq
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
24
Homo sapiens
Biosample type
13
tissue
5
in vitro differentiated cells
4
primary cell
2
cell line
Organ
11
heart
4
epithelium
3
blood vessel
3
kidney
3
vasculature
1
artery
1
connective tissue
eye
1
liver
1
pancreas
Project
24
AMP
Genome assembly (visualization)
17
GRCh38
13
hg19
Lab
13
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
Audit category:
4
inconsistent ontology term
month_released!
October, 2018
organ_slims!
eye
files.file_type!
fastq
BIOSAMPLE
ASSAY
24 results
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ChIP-seq
tissue
left cardiac atrium
5
heart left ventricle
3
ascending aorta
1
coronary artery
1
kidney
1
+ See 2 more…
in vitro differentiated cells
embryonic stem cell
5
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
epithelial cell of proximal tubule
1
kidney epithelial cell
1
cell line
EndoC_BH1
1
HepG2
1
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