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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
73
ChIP-seq
6
WGBS
3
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
73
DNA binding
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
437
bam
419
bigWig
401
tsv
41
fastq
8
tagAlign
7
bed narrowPeak
6
bigBed narrowPeak
4
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
480
tissue
2
primary cell
1
in vitro differentiated cells
Organ
759
pancreas
756
liver
649
connective tissue
483
adipose tissue
373
epithelium
heart
164
brain
164
kidney
147
bone element
137
vasculature
133
blood vessel
69
artery
61
musculature of body
60
blood
60
bodily fluid
37
embryo
23
spleen
15
limb
10
lung
9
eye
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
483
AMP
Genome assembly (visualization)
419
GRCh38
418
hg19
Lab
483
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
October, 2019
assay_slims!
DNA accessibility
organ_slims!
heart
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
white adipose tissue
12
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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