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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
total RNA-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
136
Transcription
39
DNA accessibility
2
3D chromatin structure
Date released
89
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
8
March, 2020
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
141
bam
140
bigWig
129
tsv
21
fastq
20
bed narrowPeak
7
bed bedgraph
6
bed bed3+
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
188
Homo sapiens
Biosample type
1823
tissue
799
primary cell
188
in vitro differentiated cells
170
cell line
7
stem cell
Organ
28
connective tissue
7
embryo
2
epithelium
1
adipose tissue
1
heart
Project
188
AMP
Genome assembly (visualization)
170
hg19
141
GRCh38
4
hg18
Lab
171
AMP-T2D consortium
10
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
month_released!
October, 2019
assay_slims!
DNA binding
assay_title!
MPRA
BIOSAMPLE
ASSAY
188 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
18
neural progenitor cell
7
10
embryonic stem cell
7
6
1
adipocyte
5
6
1
1
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