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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
1
DNase-seq
Assay category
198
DNA binding
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
35
August, 2021
24
February, 2018
12
February, 2023
6
March, 2020
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2018
Available data
162
bam
130
bed narrowPeak
130
bigWig
126
fastq
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
250
Homo sapiens
Biosample type
1290
tissue
620
primary cell
521
cell line
250
in vitro differentiated cells
8
stem cell
Organ
86
connective tissue
23
embryo
22
epithelium
15
liver
3
pancreas
1
adipose tissue
Project
250
AMP
Genome assembly (visualization)
164
hg19
136
GRCh38
4
hg18
Lab
201
AMP-T2D consortium
42
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
20
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
month_released!
October, 2019
assay_slims!
Transcription
BIOSAMPLE
ASSAY
250 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
DNase-seq
in vitro differentiated cells
adipocyte
67
6
1
1
embryonic stem cell
40
6
1
neural progenitor cell
21
10
pancreatic endoderm
18
1
hepatocyte
15
+ See 18 more…
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