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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
ChIP-seq
6
WGBS
5
ATAC-seq
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
7
DNA accessibility
6
DNA methylation
Date released
386
February, 2021
12
July, 2019
7
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
October, 2019
Available data
405
bam
405
bigWig
401
tsv
7
fastq
6
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
416
Homo sapiens
Biosample type
414
tissue
2
primary cell
1
in vitro differentiated cells
Organ
712
pancreas
528
connective tissue
417
adipose tissue
384
epithelium
287
kidney
256
heart
237
liver
159
bone element
127
vasculature
124
blood vessel
104
artery
66
brain
56
musculature of body
46
limb
37
eye
18
ureter
16
skeleton
15
embryo
10
lung
5
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
blood
1
bodily fluid
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
417
AMP
Genome assembly (visualization)
406
GRCh38
406
hg19
Lab
417
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
assay_title!
ChIP-seq
snATAC-seq
BIOSAMPLE
ASSAY
417 results
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total RNA-seq
WGBS
ATAC-seq
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
2
1
subcutaneous adipose tissue
7
1
1
1
omental fat pad
5
1
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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