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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
32
DNase-seq
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
134
DNA binding
36
DNA accessibility
7
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
110
histone
110
histone modification
67
broad histone mark
43
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
October, 2019
30
June, 2019
28
May, 2019
16
October, 2017
14
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
156
bam
142
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
9
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
184
Homo sapiens
Biosample type
163
tissue
21
primary cell
Organ
596
liver
525
pancreas
361
epithelium
315
heart
270
kidney
206
connective tissue
184
brain
128
vasculature
122
blood vessel
97
bone element
92
adipose tissue
90
musculature of body
69
blood
69
bodily fluid
59
artery
50
limb
35
eye
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
184
AMP
Genome assembly (visualization)
135
GRCh38
82
hg19
Lab
184
AMP-T2D consortium
Audit category:
4
missing controlled_by
month_released!
October, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
DNase-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
15
14
1
1
layer of hippocampus
22
caudate nucleus
15
1
temporal lobe
15
1
substantia nigra
15
+ See 17 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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