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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
102
ATAC-seq
70
single cell RNA-seq
47
WGBS
14
DNase-seq
7
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
116
DNA accessibility
DNA binding
70
Transcription
53
DNA methylation
7
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
33
April, 2018
33
July, 2018
16
May, 2021
14
June, 2019
14
September, 2018
13
February, 2023
8
July, 2019
October, 2019
7
August, 2020
6
February, 2021
6
November, 2020
5
September, 2017
3
August, 2017
3
August, 2018
3
March, 2020
3
October, 2022
3
September, 2020
2
August, 2021
2
November, 2019
1
December, 2019
1
June, 2018
Available data
120
bigWig
107
bam
104
fastq
80
zippedFastqFolder
78
tsv
49
bed narrowPeak
36
bigBed narrowPeak
16
bed bed3+
14
bed broadPeak
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
bedpe bed3+
5
hic
3
cool
2
hdf5
Organism
255
Homo sapiens
Biosample type
214
primary cell
29
cell line
13
tissue
Organ
326
pancreas
256
epithelium
239
kidney
186
heart
97
bone element
66
vasculature
63
blood vessel
54
connective tissue
51
musculature of body
50
brain
49
liver
48
artery
43
limb
32
eye
20
lung
19
adipose tissue
18
ureter
12
skeleton
9
blood
9
bodily fluid
5
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
157
AMP
99
HPAP
Genome assembly (visualization)
128
hg19
117
GRCh38
Lab
151
AMP-T2D consortium
99
Klaus Kaestner, Upenn
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
31
inconsistent ontology term
4
audit script error
month_released!
October, 2019
assay_title!
total RNA-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
256 results
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Clear Filters
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
35
12
31
1
pancreatic beta cell
23
12
16
1
pancreatic acinar cell
9
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 17 more…
cell line
EndoC_BH1
19
1
6
2
1
tissue
pigmented layer of retina
12
renal glomerulus
1
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