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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
89
ChIP-seq
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
pCHi-C
2
Hi-C
2
RRBS
1
small RNA-seq
Assay category
94
Transcription
89
DNA binding
77
DNA accessibility
10
DNA methylation
2
3D chromatin structure
Target of assay
57
histone
57
histone modification
34
broad histone mark
23
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
57
April, 2019
36
February, 2023
35
June, 2019
21
May, 2019
15
July, 2019
14
February, 2021
October, 2019
5
March, 2020
Available data
146
bed narrowPeak
137
bam
110
bigWig
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
2
bedpe bed3+
2
hic
Organism
275
Homo sapiens
Biosample type
252
tissue
14
cell line
9
primary cell
Organ
596
liver
525
pancreas
361
epithelium
275
heart
270
kidney
206
connective tissue
184
brain
128
vasculature
122
blood vessel
97
bone element
92
adipose tissue
90
musculature of body
69
blood
69
bodily fluid
59
artery
50
limb
35
eye
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
275
AMP
Genome assembly (visualization)
152
GRCh38
113
hg19
Lab
275
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
275 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
2
3
4
1
1
1
coronary artery
5
36
2
heart right ventricle
17
13
1
2
1
1
heart
1
9
18
1
1
right cardiac atrium
18
6
1
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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