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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
pCHi-C
2
Hi-C
2
RRBS
1
small RNA-seq
Assay category
129
DNA binding
94
Transcription
77
DNA accessibility
10
DNA methylation
2
3D chromatin structure
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
21
May, 2019
15
July, 2019
14
February, 2021
October, 2019
5
March, 2020
Available data
186
bed narrowPeak
150
bigWig
137
bam
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
2
bedpe bed3+
2
hic
Organism
315
Homo sapiens
Biosample type
292
tissue
14
cell line
9
primary cell
Organ
596
liver
407
pancreas
315
heart
260
epithelium
223
kidney
205
connective tissue
184
brain
128
vasculature
122
blood vessel
96
bone element
92
adipose tissue
90
musculature of body
61
blood
61
bodily fluid
59
artery
50
limb
35
eye
25
spleen
23
embryo
18
ureter
12
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
315
AMP
Genome assembly (visualization)
192
GRCh38
113
hg19
Lab
275
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
heart right ventricle
13
17
1
2
1
1
heart
9
1
18
1
1
+ See 9 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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