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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
123
ChIP-seq
93
single cell RNA-seq
39
ATAC-seq
30
DNase-seq
total RNA-seq
8
WGBS
3
pCHi-C
2
Hi-C
2
RRBS
1
small RNA-seq
Assay category
123
DNA binding
94
Transcription
69
DNA accessibility
10
DNA methylation
2
3D chromatin structure
Target of assay
92
histone
92
histone modification
54
broad histone mark
38
narrow histone mark
18
control
13
transcription factor
11
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
35
June, 2019
21
May, 2019
15
July, 2019
October, 2019
5
March, 2020
Available data
174
bed narrowPeak
146
bigWig
123
bam
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
301
Homo sapiens
Biosample type
292
tissue
cell line
9
primary cell
Organ
487
pancreas
317
epithelium
301
heart
266
kidney
209
liver
206
connective tissue
184
brain
114
vasculature
108
blood vessel
97
bone element
92
adipose tissue
90
musculature of body
50
limb
45
artery
35
eye
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
301
AMP
Genome assembly (visualization)
180
GRCh38
101
hg19
Lab
261
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
assay_title!
total RNA-seq
biosample_type!
cell line
BIOSAMPLE
ASSAY
301 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
left cardiac atrium
40
18
1
coronary artery
5
36
2
heart right ventricle
13
17
1
2
1
1
heart
9
1
18
1
1
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primary cell
cardiac fibroblast
5
3
1
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