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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
6
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
64
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
90
Homo sapiens
Biosample type
77
tissue
13
primary cell
Organ
596
liver
525
pancreas
361
epithelium
315
heart
270
kidney
206
connective tissue
184
brain
128
vasculature
122
blood vessel
97
bone element
92
adipose tissue
90
musculature of body
69
blood
69
bodily fluid
59
artery
50
limb
35
eye
25
spleen
23
embryo
20
lung
18
ureter
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
urinary bladder
1
vein
Project
90
AMP
Genome assembly (visualization)
69
hg19
49
GRCh38
Lab
90
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
month_released!
October, 2019
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
90 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
2
1
1
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