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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1414
total RNA-seq
1293
ChIP-seq
504
ATAC-seq
363
single cell RNA-seq
197
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
53
pCHi-C
29
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
197
DNA accessibility
Date released
187
June, 2019
October, 2019
9
November, 2018
August, 2017
4
August, 2021
1
November, 2020
Available data
199
bed bed3+
197
bam
197
bed broadPeak
197
bed narrowPeak
197
bigBed broadPeak
197
bigBed narrowPeak
197
bigWig
9
fastq
Organism
201
Homo sapiens
Biosample type
172
tissue
25
primary cell
2
cell line
2
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
16
epithelium
10
connective tissue
8
pancreas
7
vasculature
5
blood vessel
5
liver
4
eye
2
adipose tissue
2
artery
1
spleen
Project
201
AMP
Genome assembly (visualization)
197
GRCh38
176
hg19
Lab
199
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
August, 2017
BIOSAMPLE
ASSAY
201 results
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Clear Filters
DNase-seq
Capture-C
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 16 more…
cell line
EndoC_BH1
2
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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