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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1519
ChIP-seq
1503
total RNA-seq
509
ATAC-seq
362
single cell RNA-seq
193
DNase-seq
87
RNA microarray
84
snATAC-seq
68
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
193
DNA accessibility
Date released
187
June, 2019
October, 2019
November, 2018
5
August, 2017
4
August, 2021
1
November, 2020
Available data
192
bam
192
bed narrowPeak
192
bigBed narrowPeak
192
bigWig
190
bed bed3+
190
bed broadPeak
190
bigBed broadPeak
3
fastq
Organism
197
Homo sapiens
Biosample type
165
tissue
27
primary cell
3
in vitro differentiated cells
2
cell line
Organ
78
kidney
33
musculature of body
32
limb
30
brain
30
heart
18
ureter
16
epithelium
10
connective tissue
7
pancreas
7
vasculature
5
blood vessel
4
eye
3
liver
2
artery
1
adipose tissue
Project
197
AMP
Genome assembly (visualization)
190
GRCh38
171
hg19
Lab
195
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
November, 2018
BIOSAMPLE
ASSAY
197 results
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DNase-seq
Capture-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 36 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
cell line
EndoC_BH1
2
See all biosamples
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