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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1589
ChIP-seq
1503
total RNA-seq
509
ATAC-seq
363
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
202
DNA accessibility
21
DNA methylation
Date released
187
June, 2019
15
July, 2019
11
August, 2017
October, 2019
9
November, 2018
1
November, 2020
Available data
201
bam
201
bed narrowPeak
201
bigBed narrowPeak
201
bigWig
199
bed broadPeak
199
bigBed broadPeak
197
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
16
fastq
Organism
223
Homo sapiens
Biosample type
185
tissue
37
primary cell
1
in vitro differentiated cells
Organ
82
kidney
38
musculature of body
34
brain
32
heart
32
limb
20
epithelium
18
ureter
10
connective tissue
9
pancreas
8
liver
8
vasculature
5
blood vessel
5
eye
2
adipose tissue
2
artery
1
pericardium
1
spleen
Project
223
AMP
Genome assembly (visualization)
199
GRCh38
197
hg19
Lab
223
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
223 results
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DNase-seq
RRBS
tissue
heart
18
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
+ See 40 more…
primary cell
cardiac fibroblast
3
1
skeletal muscle myoblast
2
1
cardiac muscle cell
1
1
choroid plexus epithelial cell
1
1
epithelial cell of proximal tubule
1
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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