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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1589
ChIP-seq
1503
total RNA-seq
509
ATAC-seq
363
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
202
DNA accessibility
75
DNA methylation
Date released
187
June, 2019
41
May, 2022
16
November, 2018
14
August, 2017
12
July, 2019
October, 2019
6
February, 2021
1
November, 2020
Available data
219
bam
218
bigWig
201
bed narrowPeak
201
bigBed narrowPeak
199
bed broadPeak
199
bigBed broadPeak
197
bed bed3+
41
zippedFastqFolder
29
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
Organism
277
Homo sapiens
Biosample type
201
tissue
74
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
61
epithelium
58
pancreas
38
heart
34
musculature of body
33
limb
32
brain
18
ureter
15
connective tissue
11
liver
9
vasculature
8
adipose tissue
7
blood vessel
4
eye
3
spleen
2
artery
Project
230
AMP
47
HPAP
Genome assembly (visualization)
216
GRCh38
178
hg19
Lab
230
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
277 results
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DNase-seq
WGBS
tissue
heart
18
1
muscle of arm
17
brain
14
muscle of leg
13
1
kidney
13
+ See 42 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 19 more…
cell line
HepG2
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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