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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1542
ChIP-seq
1378
total RNA-seq
471
ATAC-seq
354
single cell RNA-seq
198
DNase-seq
84
snATAC-seq
75
WGBS
44
pCHi-C
26
Hi-C
19
RRBS
18
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
4
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
198
DNA accessibility
Date released
183
June, 2019
October, 2019
9
November, 2018
5
August, 2017
1
November, 2020
Available data
197
bam
197
bed narrowPeak
197
bigBed narrowPeak
197
bigWig
195
bed broadPeak
195
bigBed broadPeak
193
bed bed3+
12
fastq
Organism
198
Homo sapiens
Biosample type
173
tissue
24
primary cell
1
in vitro differentiated cells
Organ
77
kidney
32
brain
32
musculature of body
31
limb
29
heart
18
ureter
13
epithelium
8
connective tissue
7
pancreas
6
liver
6
vasculature
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
198
AMP
Genome assembly (visualization)
195
GRCh38
174
hg19
Lab
198
AMP-T2D consortium
Audit category:
inconsistent ontology term
month_released!
October, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
198 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
12
+ See 38 more…
primary cell
cardiac fibroblast
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 15 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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