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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1558
ChIP-seq
1503
total RNA-seq
509
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
15
DNase-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
15
DNA accessibility
Date released
June, 2019
October, 2019
9
November, 2018
5
August, 2017
1
November, 2020
Available data
14
bam
14
bed narrowPeak
14
bigBed narrowPeak
14
bigWig
12
bed broadPeak
12
bigBed broadPeak
12
fastq
10
bed bed3+
Organism
15
Homo sapiens
Biosample type
11
tissue
3
primary cell
1
in vitro differentiated cells
Organ
4
liver
3
connective tissue
3
pancreas
2
brain
1
adipose tissue
1
spleen
Project
15
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
15
AMP-T2D consortium
month_released!
October, 2019
June, 2019
BIOSAMPLE
ASSAY
15 results
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DNase-seq
tissue
body of pancreas
2
brain
2
liver
2
right lobe of liver
2
islet of Langerhans
1
+ See 2 more…
primary cell
skeletal muscle myoblast
2
osteoblast
1
in vitro differentiated cells
adipocyte
1
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