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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1384
ChIP-seq
1100
total RNA-seq
360
ATAC-seq
289
single cell RNA-seq
195
DNase-seq
87
RNA microarray
73
snATAC-seq
52
pCHi-C
24
WGBS
21
Hi-C
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
195
DNA accessibility
Date released
183
June, 2019
October, 2019
7
November, 2018
4
August, 2017
1
November, 2020
Available data
194
bam
194
bed narrowPeak
194
bigBed narrowPeak
194
bigWig
193
bed broadPeak
193
bigBed broadPeak
191
bed bed3+
9
fastq
Organism
195
Homo sapiens
Biosample type
167
tissue
27
primary cell
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
9
connective tissue
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
195
AMP
Genome assembly (visualization)
192
GRCh38
173
hg19
Lab
195
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
month_released!
October, 2019
organ_slims!
pancreas
BIOSAMPLE
ASSAY
195 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 35 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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