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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
328
ATAC-seq
136
total RNA-seq
122
single cell RNA-seq
87
RNA microarray
36
pCHi-C
21
Hi-C
21
RRBS
11
WGBS
10
MeRIP-seq
8
snATAC-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
DNase-seq
1
MPRA
1
whole genome sequencing assay
Assay category
21
3D chromatin structure
Date released
10
March, 2020
4
July, 2019
October, 2019
3
August, 2021
2
November, 2019
1
December, 2018
1
March, 2019
Available data
15
hic
14
bedpe bed3+
4
bed bed3+
bigWig
4
hdf5
1
bedpe
1
fastq
Organism
21
Homo sapiens
Biosample type
15
tissue
3
cell line
2
in vitro differentiated cells
1
primary cell
Organ
6
musculature of body
5
pancreas
4
limb
3
liver
2
blood vessel
2
epithelium
2
heart
2
vasculature
1
kidney
1
vein
Project
21
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
15
hg19
Lab
17
AMP-T2D consortium
3
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
3
inconsistent ontology term
month_released!
October, 2019
files.file_type!
bigWig
BIOSAMPLE
ASSAY
21 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart left ventricle
1
+ See 4 more…
cell line
HepG2
2
EndoC_BH1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
primary cell
endothelial cell of umbilical vein
1
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