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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
245
total RNA-seq
198
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
10
RRBS
9
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
9
3D chromatin structure
Date released
4
July, 2019
3
October, 2022
1
March, 2020
1
March, 2023
October, 2019
Available data
5
hic
4
bed bed3+
4
bedpe bed3+
4
bigWig
4
hdf5
3
cool
Organism
9
Homo sapiens
Biosample type
14
tissue
9
primary cell
3
cell line
2
in vitro differentiated cells
Organ
6
epithelium
3
blood vessel
3
brain
3
pancreas
3
vasculature
1
connective tissue
1
liver
1
vein
Project
5
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
5
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
ITG
Audit category:
3
audit script error
month_released!
October, 2019
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
9 results
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Hi-C
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
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