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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1190
total RNA-seq
1035
ChIP-seq
449
ATAC-seq
353
single cell RNA-seq
192
DNase-seq
84
snATAC-seq
70
WGBS
41
pCHi-C
22
Hi-C
17
RRBS
15
small RNA-seq
5
GRO-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
3
snDrop-seq
2
Capture-C
2
HiChIP
2
STARR-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
22
3D chromatin structure
Date released
7
July, 2019
7
March, 2020
October, 2019
3
October, 2022
2
August, 2021
1
March, 2019
1
March, 2023
1
November, 2019
Available data
14
hic
12
bedpe bed3+
3
bed bed3+
3
bigWig
3
cool
3
hdf5
1
bedpe
Organism
22
Homo sapiens
Biosample type
14
tissue
8
primary cell
Organ
7
pancreas
6
epithelium
6
musculature of body
4
blood vessel
4
limb
liver
4
vasculature
3
brain
2
heart
1
connective tissue
1
kidney
1
vein
Project
18
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
16
hg19
1
GRCh38
Lab
15
AMP-T2D consortium
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
inconsistent ontology term
month_released!
October, 2019
organ_slims!
liver
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
22 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart left ventricle
1
+ See 3 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of umbilical vein
1
+ See 3 more…
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