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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1589
ChIP-seq
1503
total RNA-seq
509
ATAC-seq
363
single cell RNA-seq
202
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
53
pCHi-C
29
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
286
DNA accessibility
Date released
187
June, 2019
27
February, 2021
22
May, 2022
16
January, 2021
10
April, 2020
October, 2019
9
November, 2018
6
August, 2021
5
August, 2017
2
February, 2023
1
August, 2022
1
November, 2020
Available data
201
bam
201
bed narrowPeak
201
bigBed narrowPeak
201
bigWig
199
bed broadPeak
199
bigBed broadPeak
198
bed bed3+
39
fastq
21
zippedFastqFolder
1
txt
Organism
285
Homo sapiens
Biosample type
202
tissue
83
primary cell
1
in vitro differentiated cells
Organ
84
kidney
34
musculature of body
32
brain
32
limb
30
heart
18
pancreas
18
ureter
14
epithelium
10
lung
9
connective tissue
8
blood
8
bodily fluid
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
210
AMP
48
HPAP
18
T1D
10
LungMap
Genome assembly (visualization)
199
GRCh38
179
hg19
Lab
204
AMP-T2D consortium
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
4
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
286 results
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Clear Filters
DNase-seq
snATAC-seq
tissue
kidney
13
6
heart
18
muscle of arm
17
brain
14
muscle of leg
13
+ See 40 more…
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 19 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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