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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1309
total RNA-seq
1082
ChIP-seq
487
ATAC-seq
368
single cell RNA-seq
196
DNase-seq
87
RNA microarray
84
snATAC-seq
70
WGBS
50
pCHi-C
25
Hi-C
19
RRBS
15
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
84
DNA accessibility
15
Transcription
Date released
27
February, 2021
22
May, 2022
16
January, 2021
15
July, 2019
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
Available data
27
fastq
21
zippedFastqFolder
15
bam
15
bigWig
15
tsv
1
bed bed3+
1
txt
Organism
98
Homo sapiens
Biosample type
58
primary cell
41
tissue
Organ
13
pancreas
10
lung
8
blood
8
bodily fluid
7
kidney
4
brain
3
adipose tissue
3
connective tissue
liver
3
musculature of body
1
heart
Project
48
HPAP
23
AMP
18
T1D
10
LungMap
Genome assembly (visualization)
16
hg19
15
GRCh38
Lab
48
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
17
AMP-T2D consortium
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
29
audit script error
month_released!
October, 2019
organ_slims!
liver
BIOSAMPLE
ASSAY
99 results
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snATAC-seq
small RNA-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
body of pancreas
2
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