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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
28
ATAC-seq
4
FAIRE-seq
2
DNase-seq
Assay category
64
DNA binding
34
DNA accessibility
Target of assay
33
transcription factor
31
histone
31
histone modification
19
narrow histone mark
12
broad histone mark
5
RNA binding protein
2
chromatin remodeller
Date released
33
November, 2017
28
February, 2023
24
August, 2017
8
May, 2020
2
July, 2019
1
April, 2019
1
May, 2019
1
November, 2018
October, 2019
Available data
362
bam
223
fastq
184
tsv
154
bigWig
143
tagAlign
98
bed narrowPeak
95
txt
40
bigBed narrowPeak
37
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
16
bigBed broadPeak
15
bedpe bed3+
12
hic
11
bed bed3+
10
bed bed3
8
csv
4
bed bedgraph
4
hdf5
3
tar
2
ibed
Organism
98
Homo sapiens
Biosample type
63
tissue
32
cell line
3
primary cell
Organ
40
liver
27
eye
14
musculature of body
12
epithelium
8
pancreas
2
adipose tissue
2
brain
2
connective tissue
1
heart
1
kidney
1
limb
Project
98
AMP
Genome assembly (visualization)
GRCh38
1239
hg19
Lab
98
AMP-T2D consortium
48
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
month_released!
October, 2019
assembly!
GRCh38
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
tissue
retina
15
skeletal muscle tissue
13
pigmented layer of retina
12
liver
8
islet of Langerhans
6
1
+ See 8 more…
cell line
HepG2
32
primary cell
skeletal muscle myoblast
1
2
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