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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
30
total RNA-seq
20
ATAC-seq
4
Hi-C
4
WGBS
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
192
DNA binding
31
Transcription
21
DNA accessibility
6
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
107
control
52
transcription factor
33
histone
33
histone modification
19
narrow histone mark
14
broad histone mark
7
RNA binding protein
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
40
May, 2022
35
August, 2017
32
August, 2021
32
May, 2020
13
December, 2017
3
July, 2019
2
February, 2021
2
March, 2020
1
December, 2018
1
February, 2020
1
November, 2018
Available data
150
bam
122
fastq
94
bigWig
74
bed narrowPeak
55
tagAlign
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
12
tsv
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
hdf5
1
vcf
Organism
260
Homo sapiens
Biosample type
133
cell line
123
tissue
3
primary cell
1
in vitro differentiated cells
Organ
301
pancreas
260
liver
218
epithelium
141
kidney
126
heart
113
connective tissue
93
bone element
65
adipose tissue
61
brain
42
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
14
blood
14
bodily fluid
9
limb
9
spleen
8
artery
8
skeleton
7
embryo
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
260
AMP
Genome assembly (visualization)
618
hg19
GRCh38
Lab
189
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
month_released!
October, 2019
January, 2018
assembly!
GRCh38
BIOSAMPLE
ASSAY
260 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
tissue
liver
70
20
20
1
3
1
1
1
right lobe of liver
3
1
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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