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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
10
snATAC-seq
9
single cell RNA-seq
5
total RNA-seq
1
ChIP-seq
1
RRBS
1
pCHi-C
Assay category
37
DNA accessibility
14
Transcription
1
DNA binding
1
DNA methylation
Target of assay
1
control
Date released
31
February, 2023
October, 2019
19
April, 2020
1
February, 2020
1
July, 2019
1
June, 2019
1
March, 2020
Available data
27
bed narrowPeak
6
tsv
1
bam
1
bed bedMethyl
1
bigBed bedMethyl
Organism
53
Homo sapiens
Biosample type
52
tissue
2
primary cell
Organ
301
pancreas
260
liver
218
epithelium
141
kidney
126
heart
114
connective tissue
93
bone element
66
adipose tissue
61
brain
43
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
35
AMP
19
LungMap
Genome assembly (visualization)
34
hg19
GRCh38
Lab
35
AMP-T2D consortium
19
Xin Sun, UCSD
month_released!
October, 2019
assembly!
GRCh38
BIOSAMPLE
ASSAY
54 results
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ATAC-seq
snATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
RRBS
pCHi-C
tissue
lung
10
9
1
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
1
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