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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
51
ATAC-seq
20
total RNA-seq
11
snATAC-seq
10
MeRIP-seq
5
Hi-C
2
Capture-C
2
FAIRE-seq
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
64
DNA accessibility
54
DNA binding
20
Transcription
5
3D chromatin structure
2
DNA methylation
Target of assay
45
control
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
5
nucleotide modification
Date released
36
August, 2017
24
May, 2022
19
February, 2023
18
May, 2021
11
October, 2018
10
November, 2020
October, 2019
8
January, 2021
8
March, 2020
4
August, 2021
4
July, 2018
4
November, 2019
4
September, 2017
3
March, 2019
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
November, 2018
Available data
61
bam
55
fastq
26
bed narrowPeak
12
bigWig
11
tagAlign
7
bed broadPeak
6
txt
5
tsv
4
bedpe bed3+
4
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed narrowPeak
1
bedpe
Organism
157
Homo sapiens
Biosample type
116
tissue
30
cell line
12
primary cell
1
in vitro differentiated cells
Organ
260
liver
159
pancreas
141
kidney
126
heart
114
connective tissue
93
bone element
76
epithelium
66
adipose tissue
61
brain
43
musculature of body
34
eye
31
vasculature
29
blood vessel
20
lung
15
blood
15
bodily fluid
9
limb
9
spleen
8
artery
8
embryo
8
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
HPAP
131
AMP
28
T1D
Genome assembly (visualization)
647
hg19
GRCh38
Lab
93
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
29
inconsistent ontology term
1
audit script error
month_released!
October, 2019
assembly!
GRCh38
award.project!
HPAP
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
FAIRE-seq
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
25
33
18
7
4
3
1
1
pancreas
3
1
4
1
1
1
1
body of pancreas
9
1
endocrine pancreas
2
cell line
EndoC_BH1
2
18
6
1
2
1
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
1
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