Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
32
DNase-seq
4
small RNA-seq
4
total RNA-seq
3
single cell RNA-seq
2
ATAC-seq
Assay category
94
DNA binding
34
DNA accessibility
11
Transcription
Target of assay
91
histone
91
histone modification
58
broad histone mark
33
narrow histone mark
3
RNA binding protein
3
control
3
transcription factor
Date released
October, 2019
63
November, 2017
30
June, 2019
25
May, 2019
12
July, 2019
7
October, 2017
2
November, 2018
Available data
139
bam
138
bigWig
126
bed narrowPeak
126
bigBed narrowPeak
51
tagAlign
46
bed broadPeak
38
bigBed broadPeak
32
bed bed3+
15
fastq
11
tsv
Organism
139
Homo sapiens
Biosample type
125
tissue
14
primary cell
Organ
627
pancreas
566
connective tissue
524
liver
424
adipose tissue
271
epithelium
219
heart
183
kidney
158
vasculature
154
blood vessel
139
brain
107
artery
66
bone element
54
blood
54
bodily fluid
53
musculature of body
44
limb
29
embryo
18
ureter
16
spleen
8
skeleton
6
eye
1
pericardium
Project
139
AMP
Genome assembly (visualization)
139
GRCh38
86
hg19
Lab
139
AMP-T2D consortium
Audit category:
3
missing controlled_by
month_released!
October, 2019
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
small RNA-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
tissue
brain
6
14
layer of hippocampus
16
temporal lobe
13
1
1
caudate nucleus
12
1
angular gyrus
12
+ See 17 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
See all biosamples
Download